|
|
Denitrifying anaerobic methane oxidation microorganisms in shale gas flowback water ― Community structure and key influencing factors |
LI Xin-yue1,2,3, LU Pei-li1,2,3, LIU Jun2,3, LI Shi-kang2,3, HOU Zheng-ming2, DING A-qiang1,2,3 |
1. State Key Laboratory of Coal Mine Disaster Dynamics and Control, Chongqing University, Chongqing 400044, China; 2. College of Environment and Ecology, Chongqing University, Chongqing 400045, China; 3. Key Laboratory of the Three Gorges Reservoir Region's Eco-Environments(Ministry of Education), Chongqing University, Chongqing 400045, China |
|
|
Abstract In this study, we investigated the presence of denitrifying anaerobic methane oxidizing microorganisms in high temperature, high pressure and high salt shale gas flowback water for the first time, along with their correlation with key environmental factors. The results indicated that DAMO archaea and bacteria were detected in all the seven shale gas flowback water, and the archaea exhibiting significantly higher abundance compared to bacteria with 16S rRNA gene copy ranging from 4.32×104~ 5.83×105copies/L and 1.16×103~6.00×103 copies/L, respectively. Additionally, the functional genes mcrA and pomA of DAMO archaea and bacteria were also detected in all the samples. Four representative OTUs of DAMO bacteria and one representative OTU of DAMO archaea were identified in the shale gas flowback water. Despite the high salinity, the DAMO bacteria and archaea detected in flowback water shared a closer genetic relationship to those reported in freshwater environments. RDA correlation analysis revealed that the influence of physicochemical factors in flowback water on DAMO microorganisms was more evident in microbial function rather than microbial abundance. The abundance of pmoA gene was positively and significantly correlated with TOC content, while the abundance of mcrA gene was positively correlated with the concentrations of NO3-, NH4-, PO43-, and Cl-, with Cl- having the greatest impact. These results of the study expanded the understanding of the environmental distribution of DAMO microorganisms, providing a theoretical foundation for controlling greenhouse effect caused by methane emissions in flowback water, and contributing to a deeper comprehension of microbial processes in deep shale formations.
|
Received: 19 February 2024
|
|
|
|
|
[1] Ocko I B, Sun T, Shindell D, et al. Acting rapidly to deploy readily available methane mitigation measures by sector can immediately slow global warming [J]. Environmental Research Letters, 2021, 16(5):054-042. [2] Wang J, Ciais P, Smith P, et al. The role of rice cultivation in changes in atmospheric methane concentration and the Global Methane Pledge [J]. Global Change Biology, 2023,29(10):2776-2789. [3] Saunois M, Stavert A R, Poulter B, et al. The Global Methane Budget 2000~2017[J]. Earth System Science Data, 2020,12(3):1561-1623. [4] Borrel G, Jézéquel D, Biderre-Petit C, et al. Production and consumption of methane in freshwater lake ecosystems [J]. Research in Microbiology, 2011,162(9):832-847. [5] Greening C, Grinter R. Microbial oxidation of atmospheric trace gases [J]. Nature Reviews Microbiology, 2022,20(9):513-528. [6] Myllykangas J P, Rissanen A J, Hietanen S, et al. Influence of electron acceptor availability and microbial community structure on sedimentary methane oxidation in a boreal estuary [J]. Biogeochemistry, 2020,148(3):291-309. [7] Zhang X, Yuan Z, Hu S. Anaerobic oxidation of methane mediated by microbial extracellular respiration [J]. Environmental Microbiology Reports, 2021,13(6):790-804. [8] Cai C, Zhang X, Wu M, et al. Roles and opportunities for microbial anaerobic oxidation of methane in natural and engineered systems [J]. Energy & Environmental Science, 2021,14(9):4803-4830. [9] Xie G J, Cai C, Hu S, et al. Complete Nitrogen Removal from Synthetic Anaerobic Sludge Digestion Liquor through Integrating Anammox and Denitrifying Anaerobic Methane Oxidation in a Membrane Biofilm Reactor [J]. Environmental Science & Technology, 2017,51(2):819-827. [10] Shen L, Ouyang L, Zhu Y, et al. Spatial separation of anaerobic ammonium oxidation and nitrite-dependent anaerobic methane oxidation in permeable riverbeds [J]. Environmental Microbiology, 2019,21(4):1185-1195. [11] Wang J, Yao X, Jia Z, et al. Nitrogen input promotes denitrifying methanotrophs’ abundance and contribution to methane emission reduction in coastal wetland and paddy soil [J]. Environmental Pollution, 2022,302:119090. [12] Shi Y, Ma Q, Kuzyakov Y, et al. Nitrite-dependent anaerobic oxidation decreases methane emissions from peatlands [J]. Soil Biology and Biochemistry, 2022,169:108658. [13] Deutzmann J S, Stief P, Brandes J, et al. Anaerobic methane oxidation coupled to denitrification is the dominant methane sink in a deep lake [J]. Proceedings of the National Academy of Sciences of the United States of America, 2014,111(51):18273-18278. [14] Zhang M, Huang J C, Sun S, et al. Depth-specific distribution and significance of nitrite-dependent anaerobic methane oxidation process in tidal flow constructed wetlands used for treating river water [J]. Science of The Total Environment, 2020,716:137054. [15] Xie F, Ma A, Zhou H, et al. Niche differentiation of denitrifying anaerobic methane oxidizing bacteria and archaea leads to effective methane filtration in a Tibetan alpine wetland [J]. Environment International, 2020,140:105764. [16] Dorota Szal, Renata Gruca-Rokosz. Denitrification-Dependent Anaerobic Oxidation of Methane in Freshwater Sediments of Reservoirs in SE Poland [J]. Journal of Ecological Engineering, 2019,20(9):218-227. [17] Zhong Q, Xue D, Chen H, et al. Structure and distribution of nitrite-dependent anaerobic methane oxidation bacteria vary with water tables in Zoige peatlands [J]. FEMS Microbiology Ecology, 2020,96(5):fiaa039. [18] Zhou L, Wang Y, Long X E, et al. High abundance and diversity of nitrite-dependent anaerobic methane-oxidizing bacteria in a paddy field profile [J]. Fems Microbiology Letters, 2014,360(1):33-41. [19] Ding J, Qin F, Li C, et al. Niche differentiation of denitrifying anaerobic methane oxidation microbes in Taihu Lake of China [J]. Environmental Technology & Innovation, 2022,28:102670. [20] Hu B, Shen L, Lian X, et al. Evidence for nitrite-dependent anaerobic methane oxidation as a previously overlooked microbial methane sink in wetlands [J]. Proceedings of the National Academy of Sciences of the United States of America, 2014,111(12):4495-4500. [21] Chen F, Zheng Y, Hou L, et al. Denitrifying anaerobic methane oxidation in marsh sediments of Chongming eastern intertidal flat [J]. Marine Pollution Bulletin, 2020,150:110681. [22] Kampman C, Temmink H, Hendrickx T L G, et al. Enrichment of denitrifying methanotrophic bacteria from municipal wastewater sludge in a membrane bioreactor at 20°C [J]. Journal of Hazardous Materials, 2014,274:428-435. [23] Chen J, Zhou Z C, Gu J D. Occurrence and diversity of nitrite-dependent anaerobic methane oxidation bacteria in the sediments of the South China Sea revealed by amplification of both 16S rRNA and pmoA genes [J]. Applied Microbiology and Biotechnology, 2014,98(12):5685-5696. [24] Shen L D, Qun Z, Shuai L, et al. Molecular evidence for nitrite-dependent anaerobic methane-oxidising bacteria in the Jiaojiang Estuary of the East Sea (China) [J]. Applied Microbiology and Biotechnology, 2014,98(11):5029-5038. [25] Chen J, Zhou Z, Gu J D. Complex community of nitrite-dependent anaerobic methane oxidation bacteria in coastal sediments of the Mai Po wetland by PCR amplification of both 16S rRNA and pmoA genes [J]. Applied Microbiology and Biotechnology, 2015,99(3):1463-1473. [26] Wang J, Cai C, Li Y, et al. Denitrifying Anaerobic Methane Oxidation: A Previously Overlooked Methane Sink in Intertidal Zone [J]. Environmental Science & Technology, 2019,53(1):203-212. [27] Chen J, Jiang X W, Gu J D. Existence of Novel Phylotypes of Nitrite-Dependent Anaerobic Methane-Oxidizing Bacteria in Surface and Subsurface Sediments of the South China Sea [J]. Geomicrobiology Journal, 2015,32(1):1-10. [28] Yang J, Jiang H, Wu G, et al. Co-occurrence of nitrite-dependent anaerobic methane oxidizing and anaerobic ammonia oxidizing bacteria in two Qinghai-Tibetan saline lakes [J]. Frontiers of Earth Science, 2012,6(4):383-391. [29] Zheng Y, Hou L, Chen F, et al. Denitrifying anaerobic methane oxidation in intertidal marsh soils: Occurrence and environmental significance [J]. Geoderma, 2020,357:113943. [30] Xu Y, Lun Z, Pan Z, et al. Occurrence space and state of shale oil: A review [J]. Journal of Petroleum Science and Engineering, 2022,211: 110183. [31] Bellani J, Verma H K, Khatri D, et al. Shale gas: a step toward sustainable energy future [J]. Journal of Petroleum Exploration and Production Technology, 2021,11(5):2127-2141. [32] Reynolds D B, Umekwe M P. Shale-Oil Development Prospects: The Role of Shale-Gas in Developing Shale-Oil [J]. Energies, 2019,12(17): 3331. [33] Mouser P J, Borton M, Darrah T H, et al. Hydraulic fracturing offers view of microbial life in the deep terrestrial subsurface [J]. FEMS Microbiology Ecology, 2016,92(11):fiw166. [34] 国家环境保护总局.水和废水监测分析方法(第四版) [M]. 北京:中国环境科学出版社, 2002:180-271. State Environmental Protection Administration. Analytical Methods for Water and Wastewater Monitoring (Fourth Edition) [M]. Beijing: China Environmental Science Press, 2002:180-271. [35] He Z, Wang J, Hu J, et al. Improved PCR primers to amplify 16S rRNA genes from NC10bacteria [J]. Applied Microbiology and Biotechnology, 2016,100(11):5099-5108. [36] Schubert C J, Vazquez F, Lösekann-Behrens T, et al. Evidence for anaerobic oxidation of methane in sediments of a freshwater system (Lago di Cadagno): Anaerobic methane oxidation in freshwater sediments [J]. FEMS Microbiology Ecology, 2011,76(1):26-38. [37] Kumar S, Stecher G, Li M, et al. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms [J]. Molecular Biology and Evolution, 2018,35(6):1547-1549. [38] Tamura K, Nei M. Estimation of the Number of Nucleotide Substitutions in the Control Region of Mitochondrial-Dna in Humans and Chimpanzees [J]. Molecular Biology and Evolution, 1993,10(3): 512-526. [39] Luesken F A, Zhu B, Van Alen T A, et al. pmoA Primers for Detection of Anaerobic Methanotrophs [J]. Applied and Environmental Microbiology, 2011,77(11):3877-3880. [40] Nunoura T, Oida H, Miyazaki J, et al. Quantification of mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities [J]. FEMS Microbiology Ecology, 2008,64(2):240-247. [41] Morris C. Multivariate Analysis of Ecological Data Using Canoco 5, 2nd Edition [J]. African Journal of Range & Forage Science, 2015, 32(4):289-290. [42] Owen J, Bustin R M, Bustin A M M. Insights from mixing calculations and geochemical modeling of Montney Formation post hydraulic fracturing flowback water chemistry [J]. Journal of Petroleum Science and Engineering, 2020,195:107589. [43] Wang B, Xiong M, Shi B, et al. Treatment of shale gas flowback water by adsorption on carbon-nanotube-nested diatomite adsorbent [J]. Journal of Water Process Engineering, 2021,42:102074. [44] Zhang Y, Zhao E, Cui X, et al. Removal of organic compounds from shale gas fracturing flowback water by an integrated electrocoagulation and electro-peroxone process [J]. Separation and Purification Technology, 2021,265:118496. [45] Schlegel M E, McIntosh J C, Petsch S T, et al. Extent and limits of biodegradation by in situ methanogenic consortia in shale and formation fluids [J]. Applied Geochemistry, 2013,28:172-184. [46] Haluszczak L O, Rose A W, Kump L R. Geochemical evaluation of flowback brine from Marcellus gas wells in Pennsylvania, USA [J]. Applied Geochemistry, 2013,28:55-61. [47] Zhang Y, Yu Z, Zhang H, et al. Microbial distribution and variation in produced water from separators to storage tanks of shale gas wells in Sichuan Basin, China [J]. Environmental Science: Water Research & Technology, 2017,3(2):340-351. [48] Shi H, He X, Zhou C, et al. Hydrochemistry, Sources and Management of Fracturing Flowback Fluid in Tight Sandstone Gasfield in Sulige Gasfield (China) [J]. Archives of Environmental Contamination and Toxicology, 2023,84(2):284-298. [49] Victor N. Balashov T E, Brantley S L. A model describing flowback chemistry changes with time after Marcellus Shale hydraulic fracturing [J]. AAPG Bulletin, 2015,99(1):143-154. [50] Zolfaghari A, Dehghanpour H, Noel M, et al. Laboratory and field analysis of flowback water from gas shales [J]. Journal of Unconventional Oil and Gas Resources, 2016,14:113-127. [51] Wang F, Pan Z, Zhang S. Impact of chemical osmosis on water leakoff and flowback behavior from hydraulically fractured gas shale [J]. Journal of Petroleum Science and Engineering, 2017,151:264-274. [52] Anonymous. Insights from mixing calculations and geochemical modeling of Montney Formation post hydraulic fracturing flowback water chemistry [J]. Journal of Petroleum Science and Engineering, 2020,195:107589. [53] Zolfaghari A, Dehghanpour H, Noel M, et al. Laboratory and field analysis of flowback water from gas shales [J]. Journal of Unconventional Oil and Gas Resources, 2016,14:113-127. [54] Huang T, Pang Z, Li Z, et al. A framework to determine sensitive inorganic monitoring indicators for tracing groundwater contamination by produced formation water from shale gas development in the Fuling Gasfield, SW China [J]. Journal of Hydrology, 2020,581: 124403. [55] Mu H M, Wan Y Y, Wu B C, et al. A rapid change in microbial communities of the shale gas drilling fluid from 3548m depth to the above-ground storage tank [J]. Science of The Total Environment, 2021,784:147009. [56] He C, Zhang T, Vidic R D. Co-treatment of abandoned mine drainage and Marcellus Shale flowback water for use in hydraulic fracturing [J]. Water Research, 2016,104:425-431. [57] Phan T T, Hakala J A, Sharma S. Application of isotopic and geochemical signals in unconventional oil and gas reservoir produced waters toward characterizing in situ geochemical fluid-shale reactions [J]. Science of The Total Environment, 2020,714:136867. [58] Bondu R, Kloppmann W, Naumenko-Dèzes M O, et al. Potential Impacts of Shale Gas Development on Inorganic Groundwater Chemistry: Implications for Environmental Baseline Assessment in Shallow Aquifers [J]. Environmental Science & Technology, 2021, 55(14):9657-9671. [59] Yan P, Li M, Wei G, et al. Molecular Fingerprint and Dominant Environmental Factors of Nitrite-Dependent Anaerobic Methane-Oxidizing Bacteria in Sediments from the Yellow River Estuary, China [J]. Plos One, 2015,10(9):e0137996. [60] Kahrilas G A, Blotevogel J, Stewart P S, et al. Biocides in Hydraulic Fracturing Fluids: A Critical Review of Their Usage, Mobility, Degradation, and Toxicity [J]. Environmental Science & Technology, 2015,49(1):16-32. [61] Colosimo F, Thomas R, Lloyd J R, et al. Biogenic methane in shale gas and coal bed methane: A review of current knowledge and gaps [J]. International Journal of Coal Geology, 2016,165:106-120. [62] Kojima H, Tokizawa R, Kogure K, et al. Community structure of planktonic methane-oxidizing bacteria in a subtropical reservoir characterized by dominance of phylotype closely related to nitrite reducer [J]. Scientific Reports, 2014,4(1):5728. [63] Wu M L, Van Teeseling M C F, Willems M J R, et al. Ultrastructure of the Denitrifying Methanotroph “Candidatus Methylomirabilis oxyfera,” a Novel Polygon-Shaped Bacterium [J]. Journal of Bacteriology, 2012,194(2):284-291. [64] Vaksmaa A, Lü;ke C, Van Alen T, et al. Distribution and activity of the anaerobic methanotrophic community in a nitrogen-fertilized Italian paddy soil [J]. FEMS Microbiology Ecology, 2016,92(12):fiw181. [65] Niemann H, Fischer D, Graffe D, et al. Biogeochemistry of a low-activity cold seep in the Larsen B area, western Weddell Sea, Antarctica [J]. Biogeosciences, 2009,6(11):2383-2395. [66] Sivolodskii E P. Determination of the sensitivity of bacteria to barium ions, a taxonomic marker of the genus Pseudomonas [J]. Microbiology, 2012,81(1):112-117. [67] Anupama M, Kumar K A, Latha J N L. Isolation and Characterization of Strontium Resistant Mutant of Neurospora crassa [J]. Asian Journal of Biochemistry, 2015,10(4):156-164. [68] Yang H, Yu S, Lu H. Iron-Coupled Anaerobic Oxidation of Methane in Marine Sediments: A Review [J]. Journal of Marine Science and Engineering, 2021,9(8):875 |
|
|
|