|
|
Isolation of a high-efficient diesel degrading bacteria and its degradation of alkane components of diesel |
CHEN Hong-chu, ZHANG Ting-di, FU Yu-feng, RU Jin-tao, QIN Chuan-yu |
Key Laboratory of Groundwater Resources and Environment, Ministry of Education, National and Local Joint Engineering Laboratory for Petrochemical Contaminated Site Control and Remediation Technology, Key Laboratory of Water Resources and Environment, Jilin University, Changchun 130021, China |
|
|
Abstract A diesel degrading bacterial strain 13-3isolated from oil-contaminated soil in an oilfield mining area in Northeast China was identified as Acinetobacter sp. by morphological observation and 16S rRNA. The strain could degrade 88.50% diesel of 1g/L cultured at 20℃ at 180r/min for 7days, which showed excellent diesel degrading ability compared with other strains, and the degradation rate of diesel fuel could reach 71.7% after being inoculated into 10g/kg diesel contaminated soil and remediation at 20℃ and soil moisture content of 30% for 21days, which indicated it had great potential in practical diesel-contaminated soil remediation applications. According to the analysis of GC-MS spectrum and the degrading experiments of different chain length alkane substrates, strain 13-3had a wide alkane utilization spectrum (C14~C22), and the degradation rate of C17~C20 could reach more than 90%. The results of environmental factors showed that strain 13-3could grow in the range of pH=6~9, temperature 10~30℃, salinity (NaCl) 0.5%~3%, and still had a high concentration of bacterial solution at the initial diesel concentration of 10g/L, which indicated that strain 13-3 had good environmental adaptability and was expected to exert its degradation performance under complex environmental conditions. Through whole-genome sequencing analysis, three key genes (alkB, almA, ladA) were found in the genome of strain 13-3, and the possible degradation pathway of strain 13-3 was speculated to be the terminal oxidation pathway.
|
Received: 22 February 2024
|
|
|
|
|
[1] 王迎,何闪英,吕黎,等.柴油污染土壤的微生物修复研究进展[J]. 能源工程, 2019,(3):53-57,71. Wang Y, He S Y, Lv L, et al. Research advances in microbial remediation of diesel-contaminated soils [J]. Energy Engineering, 2019,(3):53-57,71. [2] 杨茜,吴蔓莉,聂麦茜,等.石油污染土壤的生物修复技术及微生物生态效应[J]. 环境科学, 2015,36(5):1856-1863. Yang Q, Wu M L, Nie M Q, et al. Effects and biological response on bioremediation of petroleum contaminated soil [J]. Environmental Science, 2015,36(5):1856-1863. [3] 刘晓林,崔庆锋,杨正明,等.石油中长链烷烃微生物降解及分子机制研究进展[J]. 微生物学通报, 2023,50(4):1559-1575. Liu X L, Cui Q F, Yang Z M, et al. Microbial degradation and molecular mechanism of medium and long-chain alkanes in petroleum: a review [J]. Microbiology China, 2023,50(4):1559-1575. [4] 常晓宇,季蕾,黄玉杰,等.石油烃微生物降解基因及其工程菌应用研究进展[J]. 中国环境科学, 2023,43(8):4305-4315. Chang X Y, Ji L, Huang Y J, et al. Research on the application of petroleum hydrocarbon degradation genes and their recombinant bacteria [J]. China Environmental Science, 2023,43(8):4305-4315. [5] Shao Z, Wang W. Enzymes and genes involved in aerobic alkane degradation [J]. Frontiers in Microbiology, 2013,4. [6] Rojo F. Degradation of alkanes by bacteria [J]. Environmental Microbiology, 2009,11(10):2477-2490. [7] 王万鹏,邵宗泽.红灯食烷菌(Alcanivorax hongdengensis)黄素结合单加氧酶(AlmA)的基因克隆及其烷烃诱导表达[J]. 微生物学报, 2010,50(8):1051-1057. Wang W P, Shao Z Z. Identification of AlmA genes involved in long-chain alkane degradation by Alcanivorax hongdengensis A-11-3[J]. Acta Microbiologica Sinica, 2010,50(8):1051-1057. [8] 刘玉华,王慧,胡晓珂.不动杆菌属(Acinetobacter)细菌降解石油烃的研究进展[J]. 微生物学通报, 2016,43(7):1579-1589. Liu Y H, Wang H, Hu X K. Recent advances in the biodegradation of hydrocarbons by Acinetobacter species [J]. Microbiology China, 2016, 43(7):1579-1589. [9] 崔倩倩,刘朝阳.高效降解长链烷烃微生物菌株的分离鉴定与降解特性[J]. 生物化工, 2020,6(3):1-4,15. Cui Q Q, Liu Z Y. Isolation, identification and degradation characterization of an alkane-degrading microbial strains [J]. Biological Chemical Engineering, 2020,6(3):1-4,15. [10] 田秀梅,王晓丽,彭士涛,等.一株高效原油降解不动杆菌的筛选及降解特性分析[J]. 环境工程, 2019,37(6):165-169,95. Tian X M, Wang X L, Peng S T, et al. Screening and degradation characteristics of Acinetobacter degrading crude oil efficiently [J]. Environmental Engineering, 2019,37(6):165-169,95. [11] 胡春辉,于浩,赵阳国,等.高效耐盐柴油降解菌的筛选、鉴定及降解基因[J]. 中国环境科学, 2017,37(11):4251-4258. Hu C H, Yu H, Zhao Y G, et al. Isolation and identification of a high-efficient diesel degrading bacterial strain Acinetobacter sp. L7[J]. China Environmental Science, 2017,37(11):4251-4258. [12] 陆洪省,魏文超,王厚伟,等.高效石油烃降解菌SKD-1的分离、筛选及其降解性能[J]. 环境工程学报, 2013,7(10):4116-4120. Lu H S, Wei W C, Wang H W, et al. Isolation, purification of high-efficient hydrocarbon degrading bacteria SKD-1and its degradation characteristics [J]. Chinese Journal of Environmental Engineering, 2013,7(10):4116-4120. [13] Tourova T P, Sokolova D S, Semenova E M, et al. Genomic and Physiological Characterization of Halophilic Bacteria of the Genera Halomonas and Marinobacter from Petroleum Reservoirs [J]. Microbiology, 2022,91(3):235-248. [14] Liu C L, Wang W P, Wu Y H, et al. Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5[J]. Environmental Microbiology, 2011,13(5):1168-1178. [15] Throne-Holst M, Wentzel A, Ellingsen T E, et al. Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp strain DSM 17874[J]. Applied and Environmental Microbiology, 2007,73(10):3327-3332. [16] Wang W P, Shao Z Z. Genes involved in alkane degradation in the Alcanivorax hongdengensis strain A-11-3[J]. Applied Microbiology and Biotechnology, 2012,94(2):437-448. [17] Peeb A, Dang N, Truu M, et al. Assessment of Hydrocarbon Degradation Potential in Microbial Communities in Arctic Sea Ice [J]. Microorganisms, 2022,10(328):24. [18] Feng L, Wang W, Cheng J, et al. Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2isolated from a deep-subsurface oil reservoir(Article) [J]. Proceedings of the National Academy of Sciences of the United States of America, 2007,104(13):5602-5607. [19] Li L, Liu X, Yang W, et al. Crystal structure of long-chain alkane monooxygenase (LadA) in complex with coenzyme FMN: Unveiling the long-chain alkane hydroxylase [J]. Journal of Molecular Biology, 2008,376(2):453-465. [20] 王子宁,位光山,张希妍,等.基于转录组与翻译组的海洋食烷菌(Alcanivorax)烷烃代谢调控研究[J]. 微生物学报, 2023,63(12): 4606-4624. Wang Z N, Wei G S, Zhang X Y, et al. Regulation of alkane metabolism in Alcanivorax based on transcriptome and translatome [J]. Acta Microbiologica Sinica, 2023,63(12):4606-4624. [21] Jb V B, Eg F. Alkane hydroxylases involved in microbial alkane degradation [J]. Applied Microbiology and Biotechnology, 2007,74(1): 13-21. [22] Ji Y, Mao G, Wang Y, et al. Structural insights into diversity and n-alkane biodegradation mechanisms of alkane hydroxylases [J]. Frontiers in Microbiology, 2013,4:58. [23] 侯丽君,赵雷真,庄严,等.一株耐碱高效长链烷烃降解菌C24MT1的筛选及其降解特性[J]. 微生物学通报, 2023,50(6):2320-2334. Hou L J, Zhao L Z, Zhuang Y, et al. Isolation and degradation characterization of C24MT1, a highly effective long-chain alkane- degrading bacterium [J]. Microbiology China, 2023,50(6):2320-2334. [24] 刘玉华,胡晓珂.高效石油烃降解菌不动杆菌(Acinetobacter sp.BZ-15)的筛选、鉴定及其降解性能研究[J]. 中国科学:生命科学, 2016,46(9):1091-1100. Liu Y H, Hu X K. Microbial degradation of petroleum hydrocarbons by Acinetobacter sp. BZ-15, isolated from contaminated soil [J]. Science China: Life Science, 2016,46(9):1091-1100. [25] 胡梦杰,钟磊,蔡晓鲜,等.微生物降解石油烃的代谢机制及研究进展[J]. 环境工程, 2023,41(2):234-246. Hu M J, Zhong L, Cai X X, et al. Metabolic mechanism of microbial degradation of petroleum hydrocarbons and its research progress [J]. Environmental Engineering, 2023,41(2):234-246. [26] Van Beilen J B, Funhoff E G. Alkane hydroxylases involved in microbial alkane degradation [J]. Applied Microbiology and Biotechnology, 2007,74(1):13-21. [27] Park C, Shin B, Jung J, et al. Metabolic and stress responses of Acinetobacter oleivorans DR1during long-chain alkane degradation [J]. Microbial Biotechnology, 2017,10(6):1809-1823. [28] Varjani S J, Gnansounou E. Microbial dynamics in petroleum oilfields and their relationship with physiological properties of petroleum oil reservoirs [J]. Bioresource Technology, 2017,245:1258-1265. [29] 杨劼,宋东辉.一株不动杆菌降解石油烃的特性及关键烷烃降解基因分析[J]. 微生物学通报, 2020,47(10):3237-3256. Yang J, Song D H. Characterization of key alkane degradation genes from a petroleum hydrocarbon degradation Acinetobacter sp. Tust-DM21[J]. Microbiology China, 2020,47(10):3237-3256. [30] 张雅利.一株不动杆菌KJ-1降解烷烃关键基因解析[D]. 济南:齐鲁工业大学, 2023. Zhang Y L. Analysis of alkane degradation related genes in an Acinetobacter sp. KJ-1[D]. Jinan: Qilu University of Technology, 2023. [31] Cappelletti M, Fedi S, Frascari D, et al. Analyses of both the alkB gene transcriptional start site and alkB promoter-inducing properties of Rhodococcus sp strain BCP1grown on n-alkanes [J]. Applied and Environmental Microbiology, 2011,77(5):1619-1627. [32] Wang W P, Shao Z Z. Enzymes and genes involved in aerobic alkane degradation [J]. Frontiers in Microbiology, 2013,4. [33] 李梅青.Alcanivorax Dieselolei B5烷烃内膜转运机制的研究及一株食烷菌的分类鉴定[D]. 厦门:国家海洋局第三海洋研究所, 2017. Li M Q. Diversity analysis of bacteria and alkane periplasmic transport mechanism of Alcanivorax Dieselolei B5[D]. Xiamen: Third Institute of Oceanography, Ministry of Natural Resources, 2017. [34] 于寒颖,杨慧.石油烃降解酶及其基因的结构、功能和表达调控[J]. 应用与环境生物学报, 2012,18(6):1066-1074. Yu H Y, Yang H. Structure, function and expression regulation of hydrocarbon-degrading enzymes and their encoding genes [J]. Chinese Journal of Applied and Environmental Biology, 2012,18(6): 1066-1074. |
|
|
|